PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G283100.1
Common NamePHAVU_008G283100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 305aa    MW: 33692 Da    PI: 8.4746
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G283100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32150206158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Phvul.008G283100.1 150 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGNGGRF 206
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-35148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.469149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-28151206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-24152174IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860154174IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-24183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPSKSETANQ PRSNPHSFAP NNVYSEPWWR GIQYNSVPQA MSGVNASNSS SLERPNGDSE  60
SSEDQSLSNN GVNEEDDDAT KESQPTAPNQ AGNYGQEHQA MLHSSTSAPS RRDDCLTHAP  120
QLELIGHSFG YAPFIGMPHA RMALPLEMAQ EPVYVNAKQY QGILRRRQAR AKAELEKKLI  180
KVRKPYLHES RHQHAMRRAR GNGGRFAKKT EVEASSHTNK EKDMGAGPVP SDSAKTWNSP  240
SVQQDTRESQ VHERFGKHNY ANVLQSSSAF CLHSGERVEE GVCSGQQRGS ISSEQTSQRR  300
LAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-19150206258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G283100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954571e-180BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142467.10.0hypothetical protein PHAVU_008G283100g
RefseqXP_007142468.10.0hypothetical protein PHAVU_008G283100g
SwissprotQ945M91e-57NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLV7B9A70.0V7B9A7_PHAVU; Uncharacterized protein
STRINGXP_007142467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-60nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]