PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G270400.2
Common NamePHAVU_008G270400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 320aa    MW: 37064.5 Da    PI: 8.355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G270400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.2e-066385123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+dCg +F+ + +L +H+++H
  Phvul.008G270400.2 63 HTCEDCGITFKKHAYLLQHMQSH 85
                        79*******************99 PP
2zf-C2H2193.9e-0691115123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C   dC  s++rk++L+rH+ +H
  Phvul.008G270400.2  91 FVCAldDCQASYRRKDHLTRHLLLH 115
                         89********************998 PP
3zf-C2H215.16.6e-05120145123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp  +C++ Fs  sn+krH    H
  Phvul.008G270400.2 120 FKCPvvNCNTEFSLLSNMKRHVEEiH 145
                         89*******************98777 PP
4zf-C2H2201.8e-06160184123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk+F+  s+Lk+H  +H
  Phvul.008G270400.2 160 HVCPeiGCGKVFRFASQLKKHEDSH 184
                         79*******************9888 PP
5zf-C2H216.42.6e-05251276123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++C+   C+ +Fs+ksnL +H ++ H
  Phvul.008G270400.2 251 FQCEfkGCSCTFSNKSNLDKHKKVvH 276
                         89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355281941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7251946IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-86185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0076385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.2976390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-1071124No hitNo description
Gene3DG3DSA:3.30.160.602.0E-1186117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04991115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09791120IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5118146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-5118146No hitNo description
SMARTSM003550.017120145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949120150IPR007087Zinc finger, C2H2
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-7156184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.96E-5157186No hitNo description
SMARTSM003550.0051160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003552.6192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM0035535220241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.08E-9233286No hitNo description
PROSITE profilePS5015713.547251281IPR007087Zinc finger, C2H2
SMARTSM003550.0029251276IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-6251275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5276305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512282308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVEAVEIEER PKFRDIRRYF CQYCGICRSK KTLITSHINS HHKEEDEKAR KERDPEEESS  60
KSHTCEDCGI TFKKHAYLLQ HMQSHSLERP FVCALDDCQA SYRRKDHLTR HLLLHEGKTF  120
KCPVVNCNTE FSLLSNMKRH VEEIHDDSSP AVTDKSHKQH VCPEIGCGKV FRFASQLKKH  180
EDSHVKLESV DVVCLEPGCM MHFTNVQCLK AHVNSSHQYM TCDICGSKQL KKNIKRHLRS  240
HEPDSSSLET FQCEFKGCSC TFSNKSNLDK HKKVVHLKEK PFLCGFPDCG MRFAYKHVRD  300
KHEKTVKHVF TLVSSTFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-156721219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-156721219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G270400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-111AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142320.10.0hypothetical protein PHAVU_008G270400g
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLV7B9240.0V7B924_PHAVU; Uncharacterized protein
STRINGXP_007142319.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-119transcription factor IIIA