PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G257400.1
Common NamePHAVU_008G257400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 123aa    MW: 13608.8 Da    PI: 8.0324
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G257400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-4271071101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck+lrr+C++dC++apyfp+++  +fa+vhk+FG sn++k+lk++p ++r da++slvyeA+ar+r+PvyG+vg+i++l+ q+++l+
  Phvul.008G257400.1   7 PCASCKFLRRRCSQDCIFAPYFPSNDLCNFAIVHKVFGCSNIIKMLKDVPVDQRGDAVKSLVYEANARVRNPVYGCVGIISNLEIQVSELQ 97 
                         7****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                          +la+++ee+
  Phvul.008G257400.1  98 MQLAVVQEEI 107
                         *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.2286107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGGNSSPCAS CKFLRRRCSQ DCIFAPYFPS NDLCNFAIVH KVFGCSNIIK MLKDVPVDQR  60
GDAVKSLVYE ANARVRNPVY GCVGIISNLE IQVSELQMQL AVVQEEILSI KKQQEFTFTN  120
AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4031087112LOB family transfactor Ramosa2.1
5ly0_B1e-4031087112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G257400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-77AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142160.15e-86hypothetical protein PHAVU_008G257400g
SwissprotQ8LBW31e-55LBD12_ARATH; LOB domain-containing protein 12
TrEMBLV7B8M11e-84V7B8M1_PHAVU; Uncharacterized protein
STRINGXP_007142160.12e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-58LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]