PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G254600.1
Common NamePHAVU_008G254600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 301aa    MW: 32970.6 Da    PI: 6.9554
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G254600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15226262135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Phvul.008G254600.1 226 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 262
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.62482117IPR010399Tify domain
SMARTSM009795.8E-1182117IPR010399Tify domain
PfamPF062001.3E-1286116IPR010399Tify domain
PROSITE profilePS5101713.205150192IPR010402CCT domain
PfamPF062036.3E-16150192IPR010402CCT domain
SMARTSM004017.0E-13220273IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827220279IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12221272No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15224267IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.76E-14225281No hitNo description
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13226262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGIHGGDSR IHISDGQHPI HVPYVQEHEH HGLHHMSNGN GIDEDQNDGG DTNCGGSESV  60
EGDIPSSHGN LPDNHGVIMH QGGDAGDQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGREI  120
PPTMPTMPVS PHHNNRGFTG TPQKFSVPQR LASLIRFREK RKERNFDKKI RYTVRKEVAL  180
RMQRNKGQFT SSKSNHDESA LALTNWGPNE NWSAENNGSQ QQDIVCRHCG ISEKCTPMMR  240
RGPEGPRTLC NACGLMWANK GTLRDLSRAP PISGPIKNEN KSVEANQIVL RVAGEADDSS  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G254600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-156AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142122.10.0hypothetical protein PHAVU_008G254600g
SwissprotQ8H1G01e-132GAT28_ARATH; GATA transcription factor 28
TrEMBLV7BCC30.0V7BCC3_PHAVU; Uncharacterized protein
STRINGXP_007142122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-135ZIM-LIKE 2