PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G247500.1
Common NamePHAVU_008G247500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 736aa    MW: 82007.5 Da    PI: 6.9115
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G247500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-19312412199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l ++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++ 
  Phvul.008G247500.1 312 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLHMKDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQALQLNAGDIVIFSRID- 400
                         99**************************555556677***************9989999999***9.********************987. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          ++++v++++r+
  Phvul.008G247500.1 401 PGGKFVLGFRRA 412
                         777779999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-30309417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-20309411IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-24310411No hitNo description
PfamPF023624.3E-16312412IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856312413IPR003340B3 DNA binding domain
SMARTSM010191.5E-23312413IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MEVEVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC  60
DFCNKSIHCG CIISRFSFEY LDFGGIRCSS CLKATQLPLI QETGNSIRPI RSVKNHAEHI  120
DDRLFLDGCS KRKLMHMRSI VDGRESSRWP QAKRDDIDSC IDLNREDMRF SNVMKPSNHS  180
LKFTTLENNR PSWESRSMHR SSSLNISLGD SSGNSVLPSA LEIAEGRFEG KTSSSSFHQG  240
KRSLSMMPKP LINAITINME TSNGMVSQER VARPPTDGKG RNMLLSRYWP RITDQELQQL  300
SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KSCAEAYFPP ISQSEGLPLH MKDVKGNEWT  360
FQFRFWPNNN SRMYVLEGVT PCIQALQLNA GDIVIFSRID PGGKFVLGFR RASDSIDSQV  420
DGSAAHSNVF STKKTTFSGA TANMHPGNSY HDLLQTRKGN GDPYLNRCSE HFRLGTGIAD  480
CLRTENFEMV NNDLVQLPIS VSEKTQNIGP VCKRLLVHNE DAMELRVTWE EAQGLLCPAP  540
SVKSSIVTIE DQEFEEYEEP PVFGKRTTIN ARSSGSLSFA SEETSPQELD NILVTNKDSK  600
KRRIMEKAKS IIEHEAFCLN EEASAGVLDD DLAEPGDSSG GATTKHARHR SGCICIVCIK  660
PPSGKGRHRA TCTCPACITV KRRLDTLMTR QQQWQSEGEA DGSQNDDIYE EGELSAGQID  720
LNCRPNHDED MQVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-662904192131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G247500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142042.10.0hypothetical protein PHAVU_008G247500g
TrEMBLV7BC440.0V7BC44_PHAVU; Uncharacterized protein
STRINGXP_007142042.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-170high-level expression of sugar-inducible gene 2