PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.008G234300.1

Common Name

PHAVU_008G234300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 294aa MW: 32167.9 Da PI: 6.6207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G234300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	7.8e-10	215	257	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Phvul.008G234300.1 215 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 257 569*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-14	205	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	206	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.281	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.08E-12	209	261	No hit	No description
SMART	SM00353	1.0E-11	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	217	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MALSLTSHGV NQYQKSGVEE EDGSQSTNGL SNDSASAITQ CPPLCGIGND YVQKSTHCHL 60 EEAESLINFK ANEFSNLMQG SESFLSFQQS WLFSKESNLH EGCDQWNHVS PKSTTDMRLV 120 QNFSCSETAT CYSSMFKGAK EKQQHGESSS SGWLYSEPNG HSDSVNESAA QELVLRKRSF 180 MGETMQAANA KKPCTTASKA TKPKSSPSKD PQSVAAKNRR ERISERLKIL QELVPNGSKV 240 DLVTMLEKAI SYVKFLQLQV KVLAADEFWP VQGGKAPDIS QVRQAIDAIL SSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G234300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031123	0.0	KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141889.1	0.0	hypothetical protein PHAVU_008G234300g
Swissprot	Q9FJ00	3e-58	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	V7BAJ9	0.0	V7BAJ9_PHAVU; Uncharacterized protein
STRING	XP_007141889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	9e-54	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Phvul.008G234300.1
Entrez Gene	18623807

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]