PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G220900.1 | ||||||||
Common Name | PHAVU_008G220900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17408.8 Da PI: 6.6539 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C +Ck+lrrkC++dC++apyf +++p+kfa+vhk+FGasn++k+l++lp e+r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ lk Phvul.008G220900.1 6 PCGSCKLLRRKCTEDCIFAPYFLSDDPQKFAIVHKVFGASNLSKMLQELPVEQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLK 96 7****************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Phvul.008G220900.1 97 MQLAVAQAE 105 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-42 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MGGNPPCGSC KLLRRKCTED CIFAPYFLSD DPQKFAIVHK VFGASNLSKM LQELPVEQRA 60 DAVSSLVYEA SARVRDPVYG CVGAISYLQN QVADLKMQLA VAQAEIQCIQ IDKKSLIVPS 120 EETDLHNSDH LQNNFSQFPN FGTSNSVVHH PPNYLRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 2 | 106 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 2 | 106 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G220900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 5e-65 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141734.1 | 1e-115 | hypothetical protein PHAVU_008G220900g | ||||
Swissprot | Q8LBW3 | 9e-62 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | V7BA48 | 1e-113 | V7BA48_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141734.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-64 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G220900.1 |
Entrez Gene | 18623669 |
Publications ? help Back to Top | |||
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