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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G212100.1 | ||||||||
Common Name | PHAVU_008G212100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TALE | ||||||||
Protein Properties | Length: 304aa MW: 34809.6 Da PI: 7.1902 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 233 | 267 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+++++ LA+++gL+ +q+ +WF N+R ++ Phvul.008G212100.1 233 KWPYPSESQKQALAESTGLDLKQINNWFINQRKRH 267 569*****************************885 PP | |||||||
2 | ELK | 38.5 | 2.5e-13 | 187 | 208 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLk+EF+ Phvul.008G212100.1 187 ELKVQLLRKYSGYLGSLKKEFL 208 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.9E-15 | 53 | 97 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.7E-19 | 55 | 96 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-26 | 106 | 157 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.2E-22 | 109 | 155 | IPR005541 | KNOX2 |
SMART | SM01188 | 7.1E-7 | 187 | 208 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 187 | 207 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.8E-9 | 187 | 208 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.228 | 207 | 270 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-19 | 209 | 281 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-12 | 209 | 274 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 212 | 273 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.04E-12 | 219 | 271 | No hit | No description |
Pfam | PF05920 | 2.6E-17 | 227 | 266 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 245 | 268 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDMMNMETNR KFLSLPLSNN SGAQMRSDRR VPVATNSIAQ DHHYTHHNPT DTCSVRDKIM 60 AHPLFPRLLS SYLNCLKVGA PPDVVASLEE SCAKCESINA SSGRTGSGSI GEDPALDQFM 120 EAYCEMLIKY EQELTKPFKE AMLFFSRIEC QLKALAVSSD FGQSESSSQN EVDVHENNLD 180 TQAEDRELKV QLLRKYSGYL GSLKKEFLKK KKNGKLPKEA RQQLLDWWNR HYKWPYPSES 240 QKQALAESTG LDLKQINNWF INQRKRHWKP SEDMQFAVMD ATNYYMENVM CKPFPMDGMP 300 MLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G212100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141628.1 | 0.0 | hypothetical protein PHAVU_008G212100g | ||||
Swissprot | P46608 | 1e-118 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | V7B6U2 | 0.0 | V7B6U2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141628.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-104 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G212100.1 |
Entrez Gene | 18623577 |
Publications ? help Back to Top | |||
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