PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G205000.1
Common NamePHAVU_008G205000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 330aa    MW: 37573.4 Da    PI: 6.8524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G205000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161865148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTt Ed++l+ +v+++G+g+W+ + +  g+ R++k+c++rw ++l
  Phvul.008G205000.1 18 KGPWTTAEDDILAAYVRRHGSGNWNVVQKNTGLARCGKSCRLRWTNHL 65
                        79*******************************************996 PP
2Myb_DNA-binding44.63.4e-1472114246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+++ eE+ + +++++++G++ W++ a++++ gRt++++k++w++
  Phvul.008G205000.1  72 GAFSNEEQRKVIELHALMGNK-WAKMAQELP-GRTDNEIKNFWNT 114
                         89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-221168IPR009057Homeodomain-like
PROSITE profilePS5129415.3091365IPR017930Myb domain
SuperFamilySSF466894.49E-2815112IPR009057Homeodomain-like
SMARTSM007172.7E-121767IPR001005SANT/Myb domain
PfamPF002492.8E-151865IPR001005SANT/Myb domain
CDDcd001671.28E-102065No hitNo description
PROSITE profilePS5129423.28766120IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2469119IPR009057Homeodomain-like
SMARTSM007171.8E-1470118IPR001005SANT/Myb domain
PfamPF002491.2E-1371114IPR001005SANT/Myb domain
CDDcd001672.27E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSFSGEDKS SDKNNLKKGP WTTAEDDILA AYVRRHGSGN WNVVQKNTGL ARCGKSCRLR  60
WTNHLRPDLK TGAFSNEEQR KVIELHALMG NKWAKMAQEL PGRTDNEIKN FWNTRLKKRK  120
RNGLGIYPDD IKHVFNAHNS ETTLPTYTHY VNDSGVGSSS CVPREVFNNF STPNQPLLVP  180
PISEVPVDMQ LFEVPKEMMQ LEVPEEMMQL FHIPKEFLLQ EYVEFLEDFM NGGNYECSGG  240
PSSISSKMPP LPSSCDALQF DEPMVVVRQV HEVGTNQHYR PRSPRSNGYL ESIFYPPNVS  300
QEPKNYSNMQ GDDPIKDTLY SIIHPFFPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28151194107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G205000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-66AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141541.10.0hypothetical protein PHAVU_008G205000g
TrEMBLV7B7H50.0V7B7H5_PHAVU; Uncharacterized protein
STRINGXP_007141541.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.12e-64myb domain protein 81