PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G200700.1 | ||||||||
Common Name | PHAVU_008G200700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SRS | ||||||||
Protein Properties | Length: 348aa MW: 36659.6 Da PI: 8.3378 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 220.1 | 4.6e-68 | 127 | 287 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq +++a+ + a +s +++ +k++r +++++++s+t++s+ Phvul.008G200700.1 127 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTTATVAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTSN 216 7889************************************************999999999999999999999986.88899999****** PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ Phvul.008G200700.1 217 TTPPRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVEN 287 *********999********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.3E-62 | 129 | 286 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.0E-27 | 131 | 173 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.3E-30 | 238 | 285 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MWPGTNRSIN YPEMGMFVVA PASSFHHHHH HQQPPPHDPV MADSLNPATA LGVGVIPLLA 60 TTPCLEPDNF LGNRTRGGGI QFWQDQTPHQ SHYMKKQQQQ GLLDQSNTSS GNLVQNSGGL 120 TASGTSSGGT TCQDCGNQAK KDCTNRRCRT CCKSRGFDCP THVKSTWVPA ARRRERQLMT 180 TATVAVAGSS GSTSGTKKPR LIASQTTTTS HTSTSNTTPP RSFDTSSSHQ DAGFKESLPG 240 QVRAPAVFKC VRVTAVEDGE DEYAYQAVVK IGGHVFKGFL YDQGVENRDV YPNLSELHLG 300 GGSGSGGSGG MGRNGVSSSP MMDPSDVYAA SGGGLLGGSS AYGNPMN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G200700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141493.1 | 0.0 | hypothetical protein PHAVU_008G200700g | ||||
Swissprot | Q94CK9 | 6e-84 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | V7B6F1 | 0.0 | V7B6F1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141493.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 7e-71 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G200700.1 |
Entrez Gene | 18623462 |
Publications ? help Back to Top | |||
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