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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G194600.1 | ||||||||
Common Name | PHAVU_008G194600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33679.1 Da PI: 9.0702 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162 | 2.3e-50 | 21 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLpk+ + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++ Phvul.008G194600.1 21 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPI 110 69***************************.89***************8888899************************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Phvul.008G194600.1 111 YCVkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148 *97445566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-55 | 19 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.923 | 20 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-25 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDVPKLHNTD DEDKKEDEVV LPGFRFHPTD EELVGFYLRR KVEKKPLRIE LIKQIDIYKY 60 DPWDLPKASS VGEKEWYFFC IRGRKYRNSI RPNRVTGSGF WKATGIDKPI YCVKEPHECI 120 GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP NGKSTNTPQP NHIQEAEVWT LCRILKRVPS 180 YKKYTPNLKD SATNSSSSKT CSLESDNSKP YLTFTDSPSS LLLQQNEIKK PVFGHGHLPH 240 PPTSFSYSTF WNHHQNLEFA HENWDDLTSV VQFAVDPTRV SHHCKDSNKF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-48 | 22 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-48 | 22 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-48 | 22 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-48 | 22 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-48 | 22 | 183 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-48 | 22 | 183 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-48 | 22 | 183 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G194600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095530 | 0.0 | BT095530.1 Soybean clone JCVI-FLGm-15A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007141427.1 | 0.0 | hypothetical protein PHAVU_008G194600g | ||||
Swissprot | Q9SK55 | 4e-91 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | V7BAC6 | 0.0 | V7BAC6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141427.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-89 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G194600.1 |
Entrez Gene | 18623400 |