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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.008G190200.1 |
Common Name | PHAVU_008G190200g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
CO-like |
Protein Properties |
Length: 412aa MW: 45074.4 Da PI: 5.0008 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.008G190200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 16.8 | 1.5e-05 | 5 | 43 | 6 | 38 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
C+ +++++ +C+++ +lC +C + H+ H+
Phvul.008G190200.1 5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHS 43
*****************************5566666676 PP
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2 | zf-B_box | 17.6 | 7.9e-06 | 44 | 89 | 2 | 41 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
++ C++++ +++ C + + lC++C H + H++++
Phvul.008G190200.1 44 RNLLCERCNLQPAFVRCDEEKISLCQNCDWLAHGSsptsstHKRQT 89
6789*************************99994488888888766 PP
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3 | CCT | 63 | 9e-22 | 354 | 397 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+
Phvul.008G190200.1 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 397
899**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRNLLCER CNLQPAFVRC 60 DEEKISLCQN CDWLAHGSSP TSSTHKRQTI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE 120 QELGLMSINE NGNKSDLVPP EGQNVSGSAQ VTDLPTKVKF WAGTSSIPVS GSEPRILDQP 180 PGPGNECMPK LYCPGKKNSG ICEDDNLYDD FIMDEVDLEL ENYEELFGMA LSHSEELFEN 240 GGFESLFEAK DMSASVGESH CQGAVVAEGS SAGLVNAIQS ACSNAASADS MLSTKTEPIV 300 CFTGRQSQSN ISFSGVTKES AGDYQDCDAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR 360 YKEKKKTRKF EKKVRYASRK ARADVRRRVK GRFVKAGDVY DYDPLSQTRS F*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HM068899 | 0.0 | HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G48250.1 | 1e-119 | B-box type zinc finger protein with CCT domain |