PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

GATA

Protein Properties

Length: 312aa MW: 33895.5 Da PI: 6.3849

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G182900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.3	3.3e-16	210	245	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g Phvul.008G182900.1 210 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 245 ***99999********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.8E-13	73	108	IPR010399	Tify domain
PROSITE profile	PS51320	15.234	73	108	IPR010399	Tify domain
Pfam	PF06200	6.1E-14	74	107	IPR010399	Tify domain
PROSITE profile	PS51017	12.481	142	184	IPR010402	CCT domain
Pfam	PF06203	6.2E-16	142	184	IPR010402	CCT domain
SMART	SM00401	1.4E-13	204	257	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.13E-12	207	258	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.3E-15	208	251	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	9.71	209	253	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.73E-15	209	254	No hit	No description
Pfam	PF00320	6.4E-14	210	245	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	210	237	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDPPAMYGHS QPLNMPPQIS TAESDDGSGP DPALDAHHHI HYETHALEDG ATGAMVVVED 60 VTSDAVYVSG GGGPEESSQL TLSFRGQVYV FDAVTPDKVQ AVLLLLGGCE LSSSGSPCVD 120 VVPQQNQRGS MEYPARCSLP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ 180 FTSSKKQDGA NSYGTDQDSG QDDCQLETSC THCGISSKST PMMRRGPSGP RSLCNACGLF 240 WANRGALRDL SKRNHEHSLA PVEQVDEGND SDCRTAANPA HNNLAHAAYS EHDHPALVAD 300 RKVFQSQKML E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G182900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-115	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141281.1	0.0	hypothetical protein PHAVU_008G182900g
Swissprot	Q9LRH6	6e-94	GAT25_ARATH; GATA transcription factor 25
TrEMBL	V7B6S7	0.0	V7B6S7_PHAVU; Uncharacterized protein
STRING	XP_007141281.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-88	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Phvul.008G182900.1
Entrez Gene	18623278

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]