PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G159200.1
Common NamePHAVU_008G159200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 395aa    MW: 44354.3 Da    PI: 4.9309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G159200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.55e-27561972128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                         p G++F+P+d el+ e+L  k+   +      +  +e+i++++    i++++P++L+  +k++ +  +fF+++ ++yatg+rk+r+     
  Phvul.008G159200.1  56 PLGVKFDPSDVELL-EHLSGKCGVGNtqpdmfI--NEFITTLEgdqgICYTHPENLQ-GAKKDGSYFHFFHRTINAYATGQRKRRKihhqq 142
                         89************.99*999877664556432..233443322344*********8.556777889******************856666 PP

                 NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             ++ +W++tgk+k++++ +g  +g kk++v++  +++  k+ k++Wvmh+y+l
  Phvul.008G159200.1 143 gvtEEHWRWHKTGKTKAIIE-NGICKGFKKIMVLHvrSKSGFKPYKSNWVMHQYHL 197
                         66333556************.999***********5544555677*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3241216IPR003441NAC domain
PROSITE profilePS5100527.57255216IPR003441NAC domain
PfamPF023655.2E-1256197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MARSWLIDFG GFAKKVKSNS LSSADQIKDC GAYRECPNCH YRIGNSDVSG EWPGFPLGVK  60
FDPSDVELLE HLSGKCGVGN TQPDMFINEF ITTLEGDQGI CYTHPENLQG AKKDGSYFHF  120
FHRTINAYAT GQRKRRKIHH QQGVTEEHWR WHKTGKTKAI IENGICKGFK KIMVLHVRSK  180
SGFKPYKSNW VMHQYHLGTE EDEKEGEYVV SKIFYQQQKK TEKNEDNPMV EDPDNIVSRT  240
GPRTPKPNPP NPPRAGNSAD CDDYIDETVP LPSAQDTKAI LGESLAPISD NHDLDSSAWL  300
AGESQAVEHI EYDGLDDILL CKEILDSSAL LNDSGLDSSN LYDLAFYDNQ MARNDNESCG  360
ISVLDTLELD TPDFDLSNFN FCSQDSILQW MGRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G159200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141004.10.0hypothetical protein PHAVU_008G159200g
TrEMBLV7B8090.0V7B809_PHAVU; Uncharacterized protein
STRINGXP_007141004.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-87NAC domain containing protein 44