PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G122800.1
Common NamePHAVU_008G122800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 263aa    MW: 29464.4 Da    PI: 9.5117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G122800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05103122120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  Phvul.008G122800.1 103 FSCTVCNKTFTRFNNMQMHM 122
                         89*****************9 PP
2zf-C2H212.90.00033188210123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C k F  + + ++H +++
  Phvul.008G122800.1 188 FECRKCRKAFAVRGDWRTHEKNC 210
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-690126No hitNo description
Gene3DG3DSA:3.30.160.604.1E-6103122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783103130IPR007087Zinc finger, C2H2
SMARTSM003550.15103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355120151183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-5173208No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5174208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHKPYSFSCI SSDSAFLEAD QVGNEDSISL SLGPPCHHKS KLSNPKHSSA MNQKNPSSDD  60
LSGVTVALHI GLPTTVSKPS STPIHGPYWI PTTQQILIGP TQFSCTVCNK TFTRFNNMQM  120
HMWGHGSEYR KGTESLRGSK AGSSMLRIPC YCCEEGCRNN INYPRSRPLK DFRTLQTHYK  180
RKHGGKPFEC RKCRKAFAVR GDWRTHEKNC GKLWFCICGS DFKHKRSLKD HVRAFGNGHA  240
PHSLGGERGS EDEREMVDFS LK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G122800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140559.10.0hypothetical protein PHAVU_008G122800g
SwissprotQ9FX681e-110ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLV7B6S10.0V7B6S1_PHAVU; Uncharacterized protein
STRINGXP_007140559.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-113C2H2-like zinc finger protein