PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G119700.1
Common NamePHAVU_008G119700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 737aa    MW: 82354 Da    PI: 6.3657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G119700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.71.7e-1093637341374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+av+++d + a+++L+r++++++p gd +qRla+ f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  ++P+ 
  Phvul.008G119700.1 363 LRTLLVLCAQAVAADDYNGAHEFLKRIRKHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTS---AADFLKAYHLYLAACPFR 450
                         5789************************************************************999999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k++ ++ N +I  + +++ rvH+iDf+i +G+QWp+++q L+   +gpp+lRiTg++ p++g   +e++ etg+rLa +Ae ++vpfe+n+
  Phvul.008G119700.1 451 KMASFVSNITIRTSSSNSARVHVIDFGILYGFQWPNFIQRLSLAVGGPPKLRITGIDFPQPGfrPAERIVETGRRLAAYAEIFKVPFEYNA 541
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +ak++e+++leeL+++++E l+V + ++ +++ldesv ++s+r+++L+l+++++P+++++   +   n++ F++rf eal +ys+lfd+l
  Phvul.008G119700.1 542 -IAKKWETVQLEELKIDRDEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDML 631
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+ +p+e+ er+ +E+e++gre+ nv+aceg er+er et+++W++r+ +aGF++ ++++  +k a   +++ + + + ++e+s++l++gW
  Phvul.008G119700.1 632 ETIVPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFEHALVKRAIEKVSTSYHKDFVIDEDSQWLLQGW 722
                         ***********************************************************************999888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r ++++S+W+
  Phvul.008G119700.1 723 KGRIVYALSCWK 734
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.332337714IPR005202Transcription factor GRAS
PfamPF035145.8E-107363734IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MQRLVLMDPR ICGFSGPSNE VRLGNQRFEN DFFDQSREFG YLQSNLVPNK TPSASSVLSH  60
EEPSPEECEF SDAILSYISQ ILMEEDMEDK TCMLHDSLDL QIAERSFYEV IGEKYPSSLL  120
ENPSPVDPDG GVGDRNFSEN YGTCSYNDGD LSSILTNFRQ NLGEFPNHNL RGNSISQSSC  180
SSSNSVISSV EGPVDSPSSI LQVPDLNSES QSILQFQKGV EEASKFLPSG IGLFANLGAA  240
NFSKLEPKMG SAELSVKVEK DVGDSFLAGS KVRKHHLGEE ADDEENRSSK QAAIFSEPTL  300
PSTSMDAILL HSLGDGRKLF MARREALQTK SDKTALSNGK SKASNSGKGR SKKQSGKKEV  360
VDLRTLLVLC AQAVAADDYN GAHEFLKRIR KHSNPFGDGN QRLAHIFADG LEARLAGTGS  420
QIYKGLVSKR TSAADFLKAY HLYLAACPFR KMASFVSNIT IRTSSSNSAR VHVIDFGILY  480
GFQWPNFIQR LSLAVGGPPK LRITGIDFPQ PGFRPAERIV ETGRRLAAYA EIFKVPFEYN  540
AIAKKWETVQ LEELKIDRDE YLVVTCFYRG KNVLDESVLV DSPRNKFLSL IRKINPDLFI  600
HGITNGAFNA PFFVTRFREA LFHYSSLFDM LETIVPQEDW ERMLIEKEIF GREALNVIAC  660
EGCERVERPE TYRQWQARIL RAGFSQQSFE HALVKRAIEK VSTSYHKDFV IDEDSQWLLQ  720
GWKGRIVYAL SCWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4137073526380Protein SCARECROW
5b3h_A5e-4137073525379Protein SCARECROW
5b3h_D5e-4137073525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G119700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140522.10.0hypothetical protein PHAVU_008G119700g
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLV7B7R80.0V7B7R8_PHAVU; Uncharacterized protein
STRINGXP_007140522.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein