PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G118400.2
Common NamePHAVU_008G118400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 564aa    MW: 62981.1 Da    PI: 7.0964
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G118400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24116216198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +
  Phvul.008G118400.2 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--R 204
                         99****************************9555555679************************************************..4 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          s++el+v+v+r
  Phvul.008G118400.2 205 GSNGELRVGVRR 216
                         49999*****98 PP
2Auxin_resp86.17.2e-29242323183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k+ vGmR+k + e++ds e  +r+sGt++gv+d++p +W nSkWrsLk
  Phvul.008G118400.2 242 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRLKTRSEGDDSTEtdKRFSGTIIGVEDISP-HWVNSKWRSLK 323
                         789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-39107245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-39109231IPR015300DNA-binding pseudobarrel domain
CDDcd100179.70E-21114216No hitNo description
PROSITE profilePS5086312.238116218IPR003340B3 DNA binding domain
PfamPF023621.8E-22116216IPR003340B3 DNA binding domain
SMARTSM010195.2E-22116218IPR003340B3 DNA binding domain
PfamPF065072.2E-27242323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MSLHRGEEDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK  60
LPSEILCRVV NVHLLAEQET DEVYAQITLV PENNQTEPTC PDPCPSEVPR PRVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QNSMPSSVIS SQSMHLGVLA  240
TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKTRSEG DDSTETDKRF  300
SGTIIGVEDI SPHWVNSKWR SLKVQWDEPP SFPRPDRVSP WEIEPILASV PTTISSQPVV  360
IKNKRPRQAS EVPDLGDTPL IAPTFWDAGL TQSDITQLGV MAESKRSESS AHMWHHNSSN  420
GISMNQIKAS WLSCPSHLYL DTTDDSKSVS ASPISKTHSE RLNNDHCLDQ VDKEISKVEP  480
ATGCRLFGID LIDHTRSSSL SVDNASGVTS EGRTDVNHEP DISKASKGWK QEQLQVSPKE  540
TQSKQICSRS CTKVFDMSHV LII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-162934617355Auxin response factor 1
4ldw_A1e-162934617355Auxin response factor 1
4ldw_B1e-162934617355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G118400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140506.10.0hypothetical protein PHAVU_008G118400g
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV7B4J30.0V7B4J3_PHAVU; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9