PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G092800.1
Common NamePHAVU_008G092800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 526aa    MW: 58645.3 Da    PI: 5.9263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G092800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1874131155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Phvul.008G092800.1  74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 131
                         79*****998.**********855.55976666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.64E-3174140No hitNo description
PfamPF008473.5E-1374131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2875140IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1775139IPR016177DNA-binding domain
PROSITE profilePS5103221.65475139IPR001471AP2/ERF domain
SMARTSM003806.5E-3575145IPR001471AP2/ERF domain
PRINTSPR003672.5E-87687IPR001471AP2/ERF domain
PRINTSPR003672.5E-8105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKTNTNVSGE RKSRKRRSSG NDSVENTLEK WKEYNRQQQL GSRENGAEVI HKVPAKGSRK  60
GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL  120
AYDEAAKAMY GPSARLNFPE PSVEPVDSNG SSSSGCDKKS PSDSSENDDD VAKAELERNL  180
HQPHEEKPRF SEIGVFEVTE EKQVLSGGCV ADESIEDLKE TTTGFEQCQI NLKNIKSEMP  240
EKSEGIDREL ERVLKNSGLG EKGNNLLQKE PVEIPMNTGA NYCSSSDAAE HDIVEKSEET  300
RAESVETLKS CELSCSNHCL GYMHNMLPDS NTRPHSEHFN NTQTEVSIAR KHTEEVISEI  360
LGLCHSKCLK ISHDQTPHEP YRTEHFDEMR TKLKCLECKL KAHSIHYKNQ APVVGDSNYP  420
SMQGIHMFGG GTVGPIESMS QIDAMNNINT SRNSLPGFSS GHSRKLCDLS QQLHKLGGYL  480
PEHWNNMQFA DLEVGYDYSF LNPDYDFGLL EEQKLLDVCF PQIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1676139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G092800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140202.10.0hypothetical protein PHAVU_008G092800g
TrEMBLV7B6W70.0V7B6W7_PHAVU; Uncharacterized protein
STRINGXP_007140202.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-32ERF family protein