PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G054800.1
Common NamePHAVU_008G054800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 427aa    MW: 46803.6 Da    PI: 8.1253
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G054800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-113965127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Phvul.008G054800.1 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65
                        5789*********************97 PP
2zf-CCCH382.7e-1286110327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++C+F+H++
  Phvul.008G054800.1  86 QPECQYYLKTGTCKFGATCRFHHPR 110
                         799********************96 PP
3zf-CCCH37.44.2e-12132156327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Phvul.008G054800.1 132 EPECAYYLRTGQCKFGNTCKFHHPQ 156
                         799********************97 PP
4zf-CCCH38.42.1e-12288313227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f+++tG Ck+G+ C+F+H++
  Phvul.008G054800.1 288 DQPDCQFYMKTGDCKFGAVCRFHHPR 313
                         6899********************96 PP
5zf-CCCH38.12.5e-12333359127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Phvul.008G054800.1 333 PGEPLCVFYSRYGICKFGPSCKFDHPM 359
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763966IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-44464IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-683110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25383111IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-986110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-589110IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619129157IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10132156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4135155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718286314IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5286313IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4292314IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821332360IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4337357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVA  120
LNILGYPLRP NEPECAYYLR TGQCKFGNTC KFHHPQPSNM VLSMRSSPVY PTVQSPTTPG  180
QQSYATGITN WPSSSYIPSP RWQSPSSYAP LILPQGMVSV PGWSAYSGQM GSDSSQQTMG  240
NGQSYGTNRQ SEPTNAGSQG AYSQFRSGSV PVGFYALPRE NIFPERPDQP DCQFYMKTGD  300
CKFGAVCRFH HPRERMIPAP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG  360
VFTYNISASP SADAPGRRLL GSSSGTSALN LSSEGLIESG SANPRRLSLS ETRQIPSGDD  420
NIDEEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G054800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139732.10.0hypothetical protein PHAVU_008G054800g
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV7B5J70.0V7B5J7_PHAVU; Uncharacterized protein
STRINGXP_007139732.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1