PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G054100.1 | ||||||||
Common Name | PHAVU_008G054100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 715aa MW: 78008.6 Da PI: 6.281 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 1.9e-32 | 236 | 292 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh Phvul.008G054100.1 236 EDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSH-DGQITEIIYKGNHNHV 292 7****************************************.***************6 PP | |||||||
2 | WRKY | 102.8 | 1.9e-32 | 449 | 507 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v +tYeg+Hnhe Phvul.008G054100.1 449 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKFVLTTYEGKHNHE 507 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-28 | 227 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.652 | 230 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 233 | 294 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 235 | 293 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-25 | 236 | 291 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-35 | 434 | 509 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-28 | 442 | 509 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.264 | 444 | 509 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-37 | 449 | 508 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 450 | 507 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MEHDDLNNNQ NKNCNEESLV SESNGAKRSI AERRGFNSNA AQINTALFRT ATSTTPSPSP 60 AARSPRLTIP PGISPTALLG SPIMLPNSQA VPSSPTTGSF FMMPPLPQES NPLLPPYSAP 120 LNQVSSNFHS IKGGNRESQP LAQVQSPLDF SFPADFSKGH SVKNSEVNSY NDIEMVNDAI 180 VNANNVEMPM SGSEEVSDES AVPKNGINGE DIGGRPAPEG ELKEASHATG VVRTSEDGYN 240 WRKYGQKQVK GSEYPRSYYK CTQPNCQVKK KVERSHDGQI TEIIYKGNHN HVKPHSTHRG 300 SALSTDEVSD MAEEGALAKV DGGFMWRNVQ SGLKDSKNSL DWKGDGQERT SSTSVVTEIS 360 DPISTNKAKS LSMFESEETP ELSSTLASHD MEEDGTTQAL ALVEDEAEND ESEPKRRKKE 420 SYAVESTLPP RSVREPRVVV QIESEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC 480 TVRKHVERAS HNLKFVLTTY EGKHNHEVPT ARTNNQINTS DGGLPPNGVN GQVALALPGN 540 AGIKAETHQT LAHHFDRKPE FSNEFLRPSL IGSFNNDMKF GPSSLCQMKY PSLNNTMPYG 600 YAMNPDRCAA PQAGSIASMF PDFPMPLPLN LPSSGKFSIS GLNFNCAKPI NPIQSFLSGQ 660 QVKDIDTVFL RPKQEQKDDT IYGSCIPSLD ANASLTSSSA APSIYQRVMQ NFPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-31 | 225 | 509 | 2 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-31 | 225 | 509 | 2 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 413 | 419 | PKRRKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G054100.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139725.1 | 0.0 | hypothetical protein PHAVU_008G054100g | ||||
TrEMBL | V7B1N4 | 0.0 | V7B1N4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139725.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8349 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 4e-79 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G054100.1 |
Entrez Gene | 18621932 |