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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G046500.1 | ||||||||
Common Name | PHAVU_008G046500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20177.6 Da PI: 8.4716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 73 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr++ g+++AeI+dp +++ r++lg++ t+eeAa a+++a k++g Phvul.008G046500.1 73 SRYRGVRRRA-HGKFAAEIKDP---NRSNRIWLGTYHTEEEAALAYDNAVFKIRG 123 79*****887.8*********8...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-20 | 73 | 132 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.00E-27 | 73 | 133 | No hit | No description |
Pfam | PF00847 | 6.8E-12 | 73 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-29 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-31 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.891 | 74 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKAPHQVVVT NNNKSISKSE MDTEFDMIFS ETIEHYMVDD EACGLKNDVL VSNESSLSEN 60 GGGKVEEEVP RGSRYRGVRR RAHGKFAAEI KDPNRSNRIW LGTYHTEEEA ALAYDNAVFK 120 IRGSKAKLNF PHLIPPLDAS TIHVADPPSS SSTPEDRSEG SRKRKGVAGL LNKLARERNR 180 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 71 | 131 | 2 | 63 | ATERF1 |
3gcc_A | 3e-21 | 71 | 131 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G046500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139637.1 | 1e-132 | hypothetical protein PHAVU_008G046500g | ||||
Swissprot | Q40476 | 3e-27 | ERF1_TOBAC; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | V7B5A5 | 1e-131 | V7B5A5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139637.1 | 1e-132 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21227 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-20 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G046500.1 |
Entrez Gene | 18621855 |