PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 32359.1 Da PI: 7.5051

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.008G045100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Phvul.008G045100.1 134 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTK 188 678899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7.3e-41	134	224	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+++++l+e+n+rL+kev+eLr +l Phvul.008G045100.1 134 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCESLTEDNRRLQKEVQELR-AL 223 69*************************************************************************************9.55 PP HD-ZIP_I/II 92 k 92 k Phvul.008G045100.1 224 K 224 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	6.1E-18	1	99	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	7.5E-20	118	184	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.1E-19	120	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.653	130	190	IPR001356	Homeobox domain
SMART	SM00389	4.1E-17	132	194	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	134	188	IPR001356	Homeobox domain
CDD	cd00086	1.41E-16	134	191	No hit	No description
PROSITE pattern	PS00027	0	165	188	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.0E-11	190	224	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.3E-25	190	233	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAEKDDGVGL SLSLSLGVNQ QPLKVNHMQH PQHQQQPQPG PINHNTTLFA DLFQLPDRSS 60 DVIRGIEVKS TAYCEEDNGI SSPNSVVSSV SGSKRNERDD DNAAMVAGER TSCSRGSDDD 120 DGGGGDGGDG DGGRKKLRLT KEQSMVLEET FKEHNTLNPK RKQTLAEELN LKPRQVEVWF 180 QNRRARTKLK QTEVDCDFLK KCCESLTEDN RRLQKEVQEL RALKSSPQMY MHMNPPTTLT 240 MCPSCERGHS SSSSSPATVH SSAPTTRKLF GANIRRPVAV NTWPFDGSIP RQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.008G045100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-118	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007139620.1	0.0	hypothetical protein PHAVU_008G045100g
Swissprot	P46602	5e-82	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	V7B197	0.0	V7B197_PHAVU; Uncharacterized protein
STRING	XP_007139620.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	7e-67	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Phvul.008G045100.1
Entrez Gene	18621841

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]