PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G039900.1
Common NamePHAVU_008G039900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 519aa    MW: 56688.1 Da    PI: 7.4977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G039900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.1e-33224281260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDg+nWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  Phvul.008G039900.1 224 DDGFNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 281
                         8****************************************.***************85 PP
2WRKY107.27.9e-34404462159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.008G039900.1 404 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 462
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28211283IPR003657WRKY domain
PROSITE profilePS5081123.169218282IPR003657WRKY domain
SuperFamilySSF1182907.98E-26221282IPR003657WRKY domain
SMARTSM007745.6E-36223281IPR003657WRKY domain
PfamPF031061.1E-24224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37389464IPR003657WRKY domain
SuperFamilySSF1182901.29E-29396464IPR003657WRKY domain
PROSITE profilePS5081139.192399464IPR003657WRKY domain
SMARTSM007749.6E-40404463IPR003657WRKY domain
PfamPF031061.8E-26405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSTPNAHSDT APHPRPTITL PPRPSAEAFF SAAGGASPGP MTLVSSFFGS DAAADCRSFS  60
QLLAGAMASP MAFSAAVADN SGKDDDGPHK GFKQSRPMNL VIARSPVFTV PPGLSPSGFL  120
NSPGFFSPQS PFGMSHQQAL AQVTAQAVLA QSHMHMQADY QMHAVTAPTE PPLQQPSFAV  180
NEASEQQIVS SVPETKNSQM ETSDISQVDK KYQLVSQAID KPADDGFNWR KYGQKQVKGS  240
EYPRSYYKCT HLNCVVKKKV ERAPDGHITE IIYKGQHNHE KPQANRRVKD NSDSNGSAIV  300
QPKSESNSQG WVGQQVNKFS ENIPDCSVPE SDQTSNQGAP RQLLPGSTES EEVGDVDNRE  360
EADDIEPNPK RRNTDLAVSE VPLSQKTVTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG  420
NPHPRSYYKC TSAGCNVRKH VERASTDPKA VITTYEGKHN HDVPAARNSS HNTANTNSVP  480
LKPSVVPPEK HPLLKDMDFG NNDRRPVHLR LKEEQIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40224465878Probable WRKY transcription factor 4
2lex_A2e-40224465878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G039900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753550.0EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139560.10.0hypothetical protein PHAVU_008G039900g
SwissprotQ9XI901e-146WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLV7B1470.0V7B147_PHAVU; Uncharacterized protein
STRINGXP_007139560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-128WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]