PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G027800.1
Common NamePHAVU_008G027800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27984.9 Da    PI: 10.3145
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G027800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF915.9e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl+eyss
  Phvul.008G027800.1  9 KRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALVMFSTKGKLFEYSS 59
                        79***********************************************96 PP
2K-box87.72.2e-2979169797
               K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         + +++  + +++ e+ kL++++e L+r+ R++lG++L++L+lkeLq+LeqqL++slk+iR++Kn+++ ++i+el k+ + lqe+n +L+k+
  Phvul.008G027800.1  79 NGTNNDSEGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKM 169
                         4455666789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.95161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-31288IPR002100Transcription factor, MADS-box
CDDcd002652.81E-39275No hitNo description
PRINTSPR004041.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2683169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.13886177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FSKRRTGLLK KAHEISVLCD AQVALVMFST KGKLFEYSSE  60
RSMEDVLERY ERYTHTALNG TNNDSEGNWS FEYIKLNAKV EVLERNVRNF LGNELDPLNL  120
KELQSLEQQL DTSLKRIRTR KNQVMNQSIS ELHKRARTLQ EQNSKLTKMK EKEKTMTERP  180
QSVPETLGQN STNLNLCSPQ LLPSQRLLTL SGTLQGRTRV EERGEAQTVP TANSLIPPWM  240
LHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20184183MEF2 CHIMERA
6byy_B1e-20184183MEF2 CHIMERA
6byy_C1e-20184183MEF2 CHIMERA
6byy_D1e-20184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G027800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985711e-170BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139418.11e-179hypothetical protein PHAVU_008G027800g
RefseqXP_007139419.11e-179hypothetical protein PHAVU_008G027800g
SwissprotD7SMN62e-89FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLV7B0J41e-177V7B0J4_PHAVU; Uncharacterized protein
STRINGXP_007139418.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]