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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G019400.1 | ||||||||
Common Name | PHAVU_008G019400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Trihelix | ||||||||
Protein Properties | Length: 326aa MW: 35835.9 Da PI: 5.0795 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.2 | 4e-27 | 39 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt+qe+l+Li+++++ e+r+r g+ l +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e + ++e+ s + + ++ Phvul.008G019400.1 39 RWTRQEILVLIQGKSDAENRFRPGRgsgsafgLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWELQVRDETDSFWLMRND 129 8*********************8755677788********************************************999888888888887 PP trihelix 85 le 86 l+ Phvul.008G019400.1 130 LR 131 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.783 | 32 | 103 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.31E-14 | 38 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 39 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.1E-13 | 39 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MALDQPSNPN AVDGAGNGAT PCSAADGGDD GRPAARLPRW TRQEILVLIQ GKSDAENRFR 60 PGRGSGSAFG LSEPKWALVS AYCKKHGVNR EPVQCRKRWS NLAGDYKKIK EWELQVRDET 120 DSFWLMRNDL RRERKLPGYF DREVYNILDS PSTAAAATAE TPTAAVEAAG DEEVHLYDSN 180 RRVGSDDGLF SDCEKEEILL LAPGKDVPAP VPISEKQFQP LLQLCEGEGN AQGTTNEKRA 240 TPNPEMGSTS QGGRKRKRFS DAEEESLQSQ LIDVLEKNGK MLRDHLESQN ANFQLDRQQQ 300 KDTATNIVAV LDKLADALGR IADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G019400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139321.1 | 0.0 | hypothetical protein PHAVU_008G019400g | ||||
Swissprot | Q8VZ20 | 3e-96 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | V7B177 | 0.0 | V7B177_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139321.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 5e-89 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G019400.1 |
Entrez Gene | 18621582 |
Publications ? help Back to Top | |||
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