PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G005500.1
Common NamePHAVU_008G005500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 303aa    MW: 33008.3 Da    PI: 8.0945
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G005500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Phvul.008G005500.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e +l+++
  Phvul.008G005500.1  95 LCQAAVENVLRGA 107
                         *****99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.1E-991302IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9363109IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLRGAPIT PITSEAAASG  120
RGPPLKAYDI RHVSKDENSA ASNETQQQRV KTRSRVRRPL ANANAKPKST SNDNNGNKGT  180
ELGLSEPGLM TCEWTEEVLN RSGSHDSSLS HQSEAANAVE SESMVSVETA ETSILFRDEP  240
ESNRKLVRRT DDVGLELTLG FEPVSRAQHV VPVKKRRIEL KEFSGSAESE SCKMELGLEC  300
SA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G005500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139150.10.0hypothetical protein PHAVU_008G005500g
SwissprotQ9M8861e-107LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV7B0180.0V7B018_PHAVU; Uncharacterized protein
STRINGXP_007139150.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LOB domain-containing protein 41