PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G253000.1
Common NamePHAVU_007G253000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 286aa    MW: 31609.7 Da    PI: 8.4985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G253000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019220242223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp C++ Fs+   L+ H ++ H
  Phvul.007G253000.1 220 QCPQCDTKFSSVTALVDHVQKvH 242
                         7******************9988 PP
2zf-C2H216.72.1e-05257279223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C++ F+++ +L+ H  + H
  Phvul.007G253000.1 257 VCPKCSRGFRDPVSLVEHVERdH 279
                         7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.04E-12459No hitNo description
Gene3DG3DSA:4.10.1110.108.9E-111053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.8491056IPR000058Zinc finger, AN1-type
SMARTSM001547.2E-41352IPR000058Zinc finger, AN1-type
PfamPF014281.7E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.7E-1091155IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-993146No hitNo description
PROSITE profilePS510397.9798145IPR000058Zinc finger, AN1-type
SMARTSM001540.049101142IPR000058Zinc finger, AN1-type
PfamPF014285.5E-8101140IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.808219247IPR007087Zinc finger, C2H2
SMARTSM003550.0061219242IPR015880Zinc finger, C2H2-like
PfamPF138945.5E-4220242No hitNo description
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85256284IPR007087Zinc finger, C2H2
SMARTSM003556.8256279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVSDCKL IDFLPFTCDR CNQVYCLEHR GYIKHQCPKA DKKDVTVVIC  60
PLCAKGVRLV PDQDPNITWE NHVNTDCDPS NYEKVTKKKK CPVPGCREIL GFSNTIKCRD  120
CTVDHCLKHR FGPDHRCPGP RKMETSFSFR NILNVNKKQE SKPQSSSSAS SRWSTNFLNA  180
VSNIRASAEA GVSKLSEVNQ GWWTASSGVG SSHSSGQVEQ CPQCDTKFSS VTALVDHVQK  240
VHERNGKRSG AKVTIDVCPK CSRGFRDPVS LVEHVERDHG GSSRS*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G253000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145606.10.0hypothetical protein PHAVU_007G253000g
SwissprotQ0D5B91e-127SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLV7BKM60.0V7BKM6_PHAVU; Uncharacterized protein
STRINGXP_007145606.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]