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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.007G253000.1 |
| Common Name | PHAVU_007G253000g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
C2H2 |
| Protein Properties |
Length: 286aa MW: 31609.7 Da PI: 8.4985 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.007G253000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00019 | 220 | 242 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp C++ Fs+ L+ H ++ H
Phvul.007G253000.1 220 QCPQCDTKFSSVTALVDHVQKvH 242
7******************9988 PP
|
| 2 | zf-C2H2 | 16.7 | 2.1e-05 | 257 | 279 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp+C++ F+++ +L+ H + H
Phvul.007G253000.1 257 VCPKCSRGFRDPVSLVEHVERdH 279
7*****************99888 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 2.04E-12 | 4 | 59 | No hit | No description |
| Gene3D | G3DSA:4.10.1110.10 | 8.9E-11 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
| PROSITE profile | PS51039 | 7.849 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 7.2E-4 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 1.7E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 5.7E-10 | 91 | 155 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 1.96E-9 | 93 | 146 | No hit | No description |
| PROSITE profile | PS51039 | 7.97 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.049 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 5.5E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
| PROSITE profile | PS50157 | 8.808 | 219 | 247 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0061 | 219 | 242 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13894 | 5.5E-4 | 220 | 242 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 221 | 242 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.85 | 256 | 284 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 6.8 | 256 | 279 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 258 | 279 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MGTPEFPDLG KHCSVSDCKL IDFLPFTCDR CNQVYCLEHR GYIKHQCPKA DKKDVTVVIC 60
PLCAKGVRLV PDQDPNITWE NHVNTDCDPS NYEKVTKKKK CPVPGCREIL GFSNTIKCRD 120
CTVDHCLKHR FGPDHRCPGP RKMETSFSFR NILNVNKKQE SKPQSSSSAS SRWSTNFLNA 180
VSNIRASAEA GVSKLSEVNQ GWWTASSGVG SSHSSGQVEQ CPQCDTKFSS VTALVDHVQK 240
VHERNGKRSG AKVTIDVCPK CSRGFRDPVS LVEHVERDHG GSSRS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
