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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.007G251900.1 |
Common Name | PHAVU_007G251900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
HSF |
Protein Properties |
Length: 224aa MW: 25943.6 Da PI: 8.0628 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.007G251900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 101.4 | 8.2e-32 | 41 | 133 | 1 | 102 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
aFl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SF+RQL +YgF+kv +++ weF ++ F+kg+k
Phvul.007G251900.1 41 AFLLKTYMLVEDASTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFLRQLSTYGFRKVATSR---------WEFCNERFRKGEK 122
69****************************************************************999.........************* PP
XXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkks 102
ell++i+rkks
Phvul.007G251900.1 123 ELLCQIRRKKS 133
*********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MNCGVHHHQP SSISSLTSVS EMEEESETGL LQCMRKLSTP AFLLKTYMLV EDASTNDVVS 60 WNDDGTTFVV LQPAEFARDL LPTLFNHCNF SSFLRQLSTY GFRKVATSRW EFCNERFRKG 120 EKELLCQIRR KKSRVRKRQH TSNIDEDERF LVSAFSSDYA ILMDENKRLK KENGVLHSEL 180 TNMKRKCRDL LDLVTKYSCA MQEGVDQKPL SFRLRLEEVQ GER*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5d8k_B | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_B | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_D | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_F | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5d8l_H | 2e-21 | 40 | 133 | 3 | 107 | Heat shock factor protein 2 |
5hdk_A | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_B | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_C | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
5hdk_D | 2e-21 | 39 | 133 | 7 | 112 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 5e-78 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |