PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G231800.1
Common NamePHAVU_007G231800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 288aa    MW: 33434.7 Da    PI: 9.2986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G231800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-195198148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd llv++v+++G g+W++++r  g++R +k+c++rw +yl
  Phvul.007G231800.1 51 KGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 98
                        79********************************************97 PP
2Myb_DNA-binding53.84.6e-17104148147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Phvul.007G231800.1 104 RGQITPQEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 148
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9614698IPR017930Myb domain
SuperFamilySSF466891.09E-2950145IPR009057Homeodomain-like
SMARTSM007171.6E-1650100IPR001005SANT/Myb domain
PfamPF002492.4E-175198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2352105IPR009057Homeodomain-like
CDDcd001671.66E-115398No hitNo description
PROSITE profilePS5129425.02299153IPR017930Myb domain
SMARTSM007176.4E-15103151IPR001005SANT/Myb domain
PfamPF002491.5E-14104148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-24106152IPR009057Homeodomain-like
CDDcd001675.49E-10108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLQTLHPNTC NKHSVSQKLE EQTWKPYCMY WGEVLGGHMG RGVMEEEVWR KGPWTAEEDR  60
LLVEYVRLHG EGRWNSVSRL AGLKRNGKSC RLRWVNYLRP DLKRGQITPQ EESIIVELHA  120
RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK KKAKSPSDAA EKARNRLLRK QQFQQQQQQQ  180
LQQQQYQAQQ QLQFNFDMKG IMALLEDNTH RAPYISQSRE EMVNMQQNST EEQGFLYSML  240
NGHPSAPETS AEESLWGDGL WNLDHGNFTV ASAASKVGLY NLVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-265115327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G231800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145351.10.0hypothetical protein PHAVU_007G231800g
TrEMBLV7BJX00.0V7BJX0_PHAVU; Uncharacterized protein
STRINGXP_007145351.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-83myb domain protein 305