 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Phvul.007G230700.1 |
| Common Name | PHAVU_007G230700g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
B3 |
| Protein Properties |
Length: 354aa MW: 39957.8 Da PI: 6.7306 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.007G230700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 101.9 | 3.6e-32 | 81 | 188 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k ltpsdv+k++rlv+pk++ae++ ++ + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F
Phvul.007G230700.1 81 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDTGDVVLF 171
99*****************************9977334447889*********************************************** PP
EE-SSSEE..EEEEE-S CS
B3 83 kldgrsefelvvkvfrk 99
++++ + +l+++++r+
Phvul.007G230700.1 172 ERHRADAHRLFIGWRRR 188
*88779999******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MSINHYSMEL PETALWWPQQ QQQPILMEPT PNPSSTSWPS ADPLCLNLNN QNDDVEEDEE 60
EDRTTTTTQQ EETEDEKEPM FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS GGGGGDSGEC 120
KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDTGDVVL FERHRADAHR 180
LFIGWRRRRH GETSPVHVSS RAVGHGKSGN GNSKNEAAAA TGGGLGWTRG FYSAHPYPTH 240
QQHLHNHQPL PYQYDCLHAG RGSEGQRERR RAVGKSGSGS SSSSSSSRVL RLFGVNMECE 300
AEDDSGPSTL ECSYNSTNMP STQGTQNPHH FYHPHPPQPQ PHQILRHQPY YYY*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 8e-48 | 76 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 8e-48 | 76 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
