![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.007G227300.1 | ||||||||
Common Name | PHAVU_007G227300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 251aa MW: 27865.1 Da PI: 7.3409 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.2 | 1.2e-19 | 180 | 214 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l Phvul.007G227300.1 180 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 214 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.833 | 174 | 210 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.0E-16 | 174 | 224 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-14 | 176 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 178 | 212 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.49E-13 | 179 | 227 | No hit | No description |
Pfam | PF00320 | 3.9E-17 | 180 | 214 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 180 | 205 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MEAIGSVDDL LDFSLDIGEE DDDEDKPRKP CPSLNSKCGN PSLFNPLVPD DPNHSYSEFV 60 EEELEWLSNK DAFPSVETFV DLSCIQPDTA KMRKTTPATT PMLEYSSGSS NSNNSSNSIS 120 LLNSCDHLKV PVRARSKRRS RCRPGIADEN SGQQFWWRQP SNETSKAEEG MKISPIGRKC 180 QHCGAEKTPQ WRAGPLGPKT LCNACGVRFK SGRLVPEYRP ASSPSFRSDL HSNSHRKITE 240 MRRQKQTGMG * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.007G227300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145298.1 | 0.0 | hypothetical protein PHAVU_007G227300g | ||||
Refseq | XP_007145299.1 | 0.0 | hypothetical protein PHAVU_007G227300g | ||||
Swissprot | Q8LAU9 | 9e-47 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | V7BJT4 | 0.0 | V7BJT4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007145298.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-42 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.007G227300.1 |
Entrez Gene | 18626742 |