PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G224400.1
Common NamePHAVU_007G224400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 483aa    MW: 52633.1 Da    PI: 6.8378
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G224400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.96.5e-19102188186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea++e+ ++l+rg+l++ +Weev+ ++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Phvul.007G224400.1 102 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVALVVsgRCENQSKSVEQCKNKVDNLKKRYKLERHRMSSG-CISTSHWPWFKQLE 188
                         5*************************************9999999***************************9.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-19100190No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-68238475IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.849241476IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.43E-57242475IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.11E-115244476No hitNo description
PfamPF006962.5E-25245455IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDNHHL HQPYAPHHHF SPSAVAVAPV PPKSVADDAE DYGNPFDDDG  60
GSEKRKDREE IGEGAASYGF NKRSKAPPSS TGSAEYRKDR EEWSDTAIVC LLEAYTEKFT  120
QLNRGNLRGR DWEEVALVVS GRCENQSKSV EQCKNKVDNL KKRYKLERHR MSSGCISTSH  180
WPWFKQLEQI VGNSLPAKFP DEDKAVVSAG TSPRQSKRYG VATPSTGGQA NSMRSKALTN  240
LRWRRVVFKI SGAALTGSDT CNIDPKVAML VSREVAIASR LGVEVAIVVG GRNFFSGDAW  300
VTATGLERCT AYQVGMMATV MNSILLQSTL EKMGVQTRVQ TSIAMQEFAE PYNRQRAIRH  360
LEKGRVVIFG GISFGAGNPL FSTDIAAALR ASELNAEAVL KGTNVDGVYD CNSRDNNFTF  420
EHISFRELGS RGVTSMDASA LTFCKGNAIP VVVFNLLEPG NISKALCGEQ VGTLIDETGA  480
VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-602354751239Uridylate kinase
3ek5_B2e-602354751239Uridylate kinase
3ek5_C2e-602354751239Uridylate kinase
3ek5_D2e-602354751239Uridylate kinase
3ek5_E2e-602354751239Uridylate kinase
3ek5_F2e-602354751239Uridylate kinase
3ek6_A2e-602354751239Uridylate kinase
3ek6_B2e-602354751239Uridylate kinase
3ek6_C2e-602354751239Uridylate kinase
3ek6_D2e-602354751239Uridylate kinase
3ek6_E2e-602354751239Uridylate kinase
3ek6_F2e-602354751239Uridylate kinase
3nwy_A7e-6024347550279Uridylate kinase
3nwy_B7e-6024347550279Uridylate kinase
3nwy_C7e-6024347550279Uridylate kinase
3nwy_D7e-6024347550279Uridylate kinase
3nwy_E7e-6024347550279Uridylate kinase
3nwy_F7e-6024347550279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G224400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145266.10.0hypothetical protein PHAVU_007G224400g
SwissprotQ7VD612e-77PYRH_PROMA; Uridylate kinase
TrEMBLV7BJN90.0V7BJN9_PHAVU; Uncharacterized protein
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein