PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 282aa MW: 31913.6 Da PI: 5.6612

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G211900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.6e-18	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v++lG g+W++ a g++Rt+k+c++rw++yl Phvul.007G211900.1 31 KGTWTEEEDSLLINYVNLLGEGHWNSLAISAGLKRTGKSCRLRWLNYL 78 799*******************************************97 PP
2	Myb_DNA-binding	46.7	7.4e-15	84	127	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Phvul.007G211900.1 84 RGNITLQEQLLILELHSRWGNR-WAKIAEQLP-GRTDNEIKNYWRT 127 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.94	26	82	IPR017930	Myb domain
SMART	SM00717	6.1E-15	30	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.37E-29	30	125	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-16	31	78	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	32	85	IPR009057	Homeodomain-like
CDD	cd00167	5.10E-11	33	78	No hit	No description
PROSITE profile	PS51294	18.174	83	133	IPR017930	Myb domain
SMART	SM00717	3.5E-13	83	131	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-14	84	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-21	86	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
METMSVRVMR SLSDTELSAK YGSEEEIVIK KGTWTEEEDS LLINYVNLLG EGHWNSLAIS 60 AGLKRTGKSC RLRWLNYLRP NVRRGNITLQ EQLLILELHS RWGNRWAKIA EQLPGRTDNE 120 IKNYWRTRVV KQAKQLKCDV NSKQFRDAVR FVWMPRLMER IQASSGNASS SYGHDQTTLC 180 NTQTHGESSG ANPMMFCDSS MISSYASGVD VQPPSLSDAS TTSSCNLMGD GSCSSDSAQK 240 GWQQWDYSDL QAFEQNHGFG DADLWTDENM WFLQQHLADD F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-24	8	125	4	120	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G211900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007145122.1	0.0	hypothetical protein PHAVU_007G211900g
Swissprot	Q10MB4	3e-76	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	V7BKM5	0.0	V7BKM5_PHAVU; Uncharacterized protein
STRING	XP_007145122.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-69	myb domain protein 78

Link Out ? help Back to Top
Phytozome	Phvul.007G211900.1
Entrez Gene	18626585

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]