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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.007G196100.1 |
Common Name | PHAVU_007G196100g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
C2H2 |
Protein Properties |
Length: 520aa MW: 55588 Da PI: 8.9432 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.007G196100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Phvul.007G196100.1 91 FICEICNKGFQRDQNLQLHRRGH 113
89*******************88 PP
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2 | zf-C2H2 | 11.2 | 0.0012 | 167 | 189 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H + +
Phvul.007G196100.1 167 WKCDKCSKKYAVQSDWKAHSKIC 189
58*****************9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 520 aa
Download sequence Send
to blast |
MSNITSCDSG SFSTENTRED AAVKQKSEML GQFHSPHSLT STTTTNNSNG SNTNSQPPAP 60 VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS 180 DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKANEGQL PKIGPNLQCQ 240 QIPNLVSSLP INTNIVPNPQ IGGTSEFNHA EHKHPLSLPH ELMPMPAPKP FNNTTTMAGT 300 VFSRSLSSTS PPSLQLSSNI FEENGLHLAA GSPHMSATAL LQKAAQMGAT VTDKTFSTNM 360 APPSFGVLQQ QPNGQSFMNQ YMQSGQHDAN VNISAQYNGF GANGISGGSV GMNGVDMFNA 420 ILDQSKALSK IIEQSNRSSS GGATNGGSSA INVGGSKGSG DVMTLDFLGI GGGGAGAGGA 480 HGNFYGGSQQ AENGAPDEVW RNWSSKNAGF ESFSATSSI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |