PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G195600.1 | ||||||||
Common Name | PHAVU_007G195600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 24128 Da PI: 7.1786 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F++ L H+++H Phvul.007G195600.1 36 YACSFCKREFRSAQALGGHMNVH 58 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-6 | 33 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 34 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.198 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0092 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-6 | 36 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEGNYLNRNS TSTPQREDSF GFEEHTWGTS WPARNYACSF CKREFRSAQA LGGHMNVHRR 60 DRARLRSSLS SWVSECPKPN PSTKPNSPTL LPTSSSPSLL SDDPLNCAHP SPRCSPCLTL 120 SSSPFPASSS GDKKPRLTPS HSQFPLLSPQ SCEIKMMMSN NTRSGFSAEE EMKGCVEEED 180 HKGFKDNEKN ITLELGIGLL KHEEEKLDLE LRLGHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-11 | 31 | 58 | 2 | 29 | superman protein |
2l1o_A | 2e-11 | 31 | 58 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G195600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144930.1 | 1e-158 | hypothetical protein PHAVU_007G195600g | ||||
TrEMBL | V7BGA3 | 1e-156 | V7BGA3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144930.1 | 1e-157 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G195600.1 |
Entrez Gene | 18626419 |