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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G185400.1 | ||||||||
Common Name | PHAVU_007G185400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GeBP | ||||||||
Protein Properties | Length: 382aa MW: 42306.9 Da PI: 4.5774 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 121.4 | 4.5e-38 | 97 | 192 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrlw++eDei lLqG++d++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ v+k+++gke+sf+++hd+ +fe+s Phvul.007G185400.1 97 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVVTKISDGKEVSFKSPHDKATFEIS 187 79***************************************************************************************** PP DUF573 93 kkiWg 97 ++iW Phvul.007G185400.1 188 RRIWS 192 ****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.0E-34 | 98 | 192 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MPMASDLNDA VFPEEDLDDD DETQEDEEED DEDDDVLDDD EPPHSVLAAV SLAAPCSTVS 60 QTLGTASTAI VVADSSPKRP RTEQIEEKKA LDDSRRLFQR LWTDEDEIGL LQGFLDYTAQ 120 RGSSHHNDTA LFYDQIKSKL QLGFNKNQLV EKLRRLKKKY RNVVTKISDG KEVSFKSPHD 180 KATFEISRRI WSNTAPITGP VEDDDEINPN PNSNPNPNPI FGQSAKTPLS RKRSRPRSEK 240 REFNDGSALN KDTNCIGNSN NNSNKDNENC NHRHNLQGVI EETVRSCVSP VLKELVIGGM 300 GLGSGFGFGG RGFGVGGGFS MNPLQMPMTL SPLNLGIGEM GMDEKWRKQQ ILELEVYSKR 360 LELVQNEIKV ALEELRSTGG G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 82 | PKRPRTE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G185400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144806.1 | 0.0 | hypothetical protein PHAVU_007G185400g | ||||
Swissprot | F4K5T4 | 2e-84 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | V7BH03 | 0.0 | V7BH03_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144806.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-57 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G185400.1 |
Entrez Gene | 18626312 |
Publications ? help Back to Top | |||
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