PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 263aa MW: 30642.3 Da PI: 9.0151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G132300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Phvul.007G132300.1 22 KGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP
2	Myb_DNA-binding	49.8	8.1e-16	75	119	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++ Phvul.007G132300.1 75 KGQITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 5778****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.126	17	73	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-30	19	116	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-17	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-18	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-24	23	75	IPR009057	Homeodomain-like
CDD	cd00167	3.31E-12	24	69	No hit	No description
PROSITE profile	PS51294	18.539	74	124	IPR017930	Myb domain
SMART	SM00717	3.8E-14	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	75	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	76	123	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-9	79	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MYWGVMAGNM GWGVMEEEGW RKGPWTAEED RLLIQYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKKGQITP QEESIIQELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKTKSPSDA AEKARIRSSR RQQFQQQQLQ LKHQQQVQQQ QQQFQFNLDI KGIINLLEEN 180 DHRVPSTSQE TQEMVNMYPN TSEPQGYFYS MFNVNDNVSA PESSNEEILW DELWNLDDVL 240 CNFNAASATS KASLHNLVAP FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	22	124	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.
UniProt	Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269\|PubMed:11967090, ECO:0000269\|PubMed:16805732, ECO:0000269\|PubMed:19091873, ECO:0000269\|PubMed:19325888, ECO:0000269\|PubMed:21447791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G132300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by jasmonate. {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP966100	0.0	KP966100.1 Lablab purpureus R2R3-MYB factor (MYB) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007144143.1	0.0	hypothetical protein PHAVU_007G132300g
Swissprot	P81391	3e-52	MYB05_ANTMA; Myb-related protein 305
Swissprot	Q9LK95	4e-52	MYB21_ARATH; Transcription factor MYB21
TrEMBL	V7BE96	0.0	V7BE96_PHAVU; Uncharacterized protein
STRING	XP_007144143.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-80	myb domain protein 305

Link Out ? help Back to Top
Phytozome	Phvul.007G132300.1
Entrez Gene	18625763

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Su Z, et al. Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis. Plant Cell, 2013. 25(10): p. 3785-807 [PMID:24179129] Liu Z, et al. A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation. Mol Plant, 2015. 8(12): p. 1751-65 [PMID:26388305] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Huang H, et al. Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development. Front Plant Sci, 2017. 8: p. 1525 [PMID:28928760]