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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G128000.1 | ||||||||
Common Name | PHAVU_007G128000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 15911.7 Da PI: 9.3397 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 70.3 | 3.3e-22 | 15 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps++g r++lg+f+taeeAa+a+++a+ +l+g+ Phvul.007G128000.1 15 RYRGVRRRP-WGKYAAEIRDPSKQG--SRVWLGTFDTAEEAARAYDRAAFNLRGH 66 6********.**********98865..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-24 | 15 | 74 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-16 | 15 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.36E-31 | 15 | 73 | No hit | No description |
SMART | SM00380 | 7.6E-39 | 15 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 15 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.869 | 15 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-12 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-12 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEENQKGKQG KEEVRYRGVR RRPWGKYAAE IRDPSKQGSR VWLGTFDTAE EAARAYDRAA 60 FNLRGHLATL NFPSEYYSQI RGSPPYPPHL APPSSSSSHA AGCTSSSGAY HRPVFEIPCL 120 DDKVLEDLLG QSEENKKKKK GE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-31 | 1 | 140 | 1 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G128000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144092.1 | 1e-102 | hypothetical protein PHAVU_007G128000g | ||||
Swissprot | Q9LTC5 | 6e-45 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | V7BHZ7 | 1e-101 | V7BHZ7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144092.1 | 1e-102 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G128000.1 |
Entrez Gene | 18625718 |
Publications ? help Back to Top | |||
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