PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G105700.1
Common NamePHAVU_007G105700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 483aa    MW: 52373.7 Da    PI: 7.3804
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G105700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.51.7e-18106194286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + +L+ea++++ ++l+rg+l++ +Weev++++      e + ++s +qCk+k++nl+kryk + ++ ++    ++s++ +f+++e
  Phvul.007G105700.1 106 WSDTAIACLLEAYTDKFNQLNRGNLRGRDWEEVAEAVgercgGEVKHQKSVEQCKNKIDNLKKRYKVELQRIGSD-GIDTSHWHWFNKIE 194
                         *************************************99999999*********************999999996.677789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-20103196No hitNo description
SMARTSM005950.0013113201IPR006578MADF domain
Gene3DG3DSA:3.40.1160.102.5E-71230471IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.943236471IPR015963Uridylate kinase, bacteria
SuperFamilySSF536338.9E-57237471IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.07E-122239471No hitNo description
PfamPF006963.5E-25240450IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MATEDFPLLD SPSHAQPHIH APTLHHFPSS SSSSLTTLLA ADSVTADYYP HSSFSDDSAK  60
SGSKRASAAG SSYYHNKKLK SAAHSDSKTD GTFRRGSDYR KDREDWSDTA IACLLEAYTD  120
KFNQLNRGNL RGRDWEEVAE AVGERCGGEV KHQKSVEQCK NKIDNLKKRY KVELQRIGSD  180
GIDTSHWHWF NKIEAIVDTS AADVNSSSMA RQTKNRYGPN NGVVANNLKT KPESNLKWQR  240
VLFKISGSAL AGNGQNIDPK VAMQIAREVA TACRLGVEVA IVVGGSNFFC GDAWVSATGL  300
DRPTAYQIGM MATVMNSILL QSALEKLGVQ ARVQSAFSMP EVAEPYSRQR SIRHLEKGRV  360
VIFGGVGAGI GNPLFTTDTA AVLRASEINA DAVLKGTNVN GVFFDCHPGN DNATLDRISF  420
REVVSRGVAT MDTMALAYCE ENGIPVVVFN MLEPGNVSRA LCGDQVGTLI EQTGRVEHQL  480
PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-662344715240Uridylate kinase
3ek5_B1e-662344715240Uridylate kinase
3ek5_C1e-662344715240Uridylate kinase
3ek5_D1e-662344715240Uridylate kinase
3ek5_E1e-662344715240Uridylate kinase
3ek5_F1e-662344715240Uridylate kinase
3ek6_A1e-662344715240Uridylate kinase
3ek6_B1e-662344715240Uridylate kinase
3ek6_C1e-662344715240Uridylate kinase
3ek6_D1e-662344715240Uridylate kinase
3ek6_E1e-662344715240Uridylate kinase
3ek6_F1e-662344715240Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G105700.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143835.10.0hypothetical protein PHAVU_007G105700g
TrEMBLV7BDD40.0V7BDD4_PHAVU; Uncharacterized protein
STRINGXP_007143835.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-163Trihelix family protein