PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G104900.1
Common NamePHAVU_007G104900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 518aa    MW: 59282.8 Da    PI: 6.2478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G104900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.71.5e-28115200187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l L+e+r++++ ++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+++r  ++ +++++f+qlea
  Phvul.007G104900.1 115 RWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKGSR--QDGKHYRFFRQLEA 200
                         8*************************************7778****************************98..55667*******85 PP
2trihelix45.32.3e-14429497168
            trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                         rWt+ e+  Li++r+  e+r+r+ g l+ +lW+e+s+k+   gf rs  +Ck+ w++++   +++ +  
  Phvul.007G104900.1 429 RWTEMEIANLIQLRTGFEQRFREnGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDEC 497
                         8*********************8568********************************99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5112175IPR001005SANT/Myb domain
PROSITE profilePS500906.888114173IPR017877Myb-like domain
PfamPF138371.8E-19114201No hitNo description
CDDcd122033.46E-21114180No hitNo description
PROSITE profilePS500906.737422487IPR017877Myb-like domain
SMARTSM007170.42426489IPR001005SANT/Myb domain
PfamPF138371.2E-8428500No hitNo description
CDDcd122035.22E-15428493No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGDPYGLPED LRRFIPPRTH LNPSNTHLLE PLCLHHGLSG VAAATTTPPN TYDPNMVGDV  60
FFPRAFTHFA HHHDYSSSSG VHPTNTATAA VSDHAFCSME SAEKGWFGFD SGNNRWPRQE  120
TLSLLEIRSR LDCKFRENNQ KAPLWNEISR IMAEEFGYQR SGKKCKEKFE NLYKYYKKTK  180
EGKGSRQDGK HYRFFRQLEA ICGDQANTNH ASTSEKGQRG GGNNANIQTP TFTVNQDHNV  240
DSNNNPKCSE SLSITNSSEL ETSSSENNEE DLSAIAFMMR QPREKQKALD ERHSDHRRLR  300
KSWRAKVEEI VDSHMRKIIE TQDAWMERML GVVEQREQEM TSKEEERKRK ESTWFDQQVH  360
ELWAKEKAWV EARDAALIEV VRKHVGIGLE ALPLDEAMVE EAANKNKGQG KIDSSEFPSE  420
GVDQRSSSRW TEMEIANLIQ LRTGFEQRFR ENGYLENGLW DEISAKLGCL GFDRSGSECK  480
QIWDEISISL RRTVDECDGG KRRPWYLGLK VTDDDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143826.10.0hypothetical protein PHAVU_007G104900g
TrEMBLV7BE190.0V7BE19_PHAVU; Uncharacterized protein
STRINGXP_007143826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-76Trihelix family protein