PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G101200.1
Common NamePHAVU_007G101200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 859aa    MW: 95340.6 Da    PI: 5.9787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G101200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.63.2e-162072456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        R+++ +e + +Lee F+++++p++++r+++ ++lgL+ +qVk+WFqN++++ +
  Phvul.007G101200.1 20 RHRHDPEIIVRLEEIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLR 72
                        88999999*****************************************9876 PP
2START143.61.9e-453745962206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                         +a++a++el+k+ + +ep+W++s      ++++d + ++f++s++      ++e +++s+vv m  ++lve +l++  +W   ++    ka
  Phvul.007G101200.1 374 IANTAMEELMKLLSMNEPFWFRSIvdgrFILQRDCYQRIFQRSNTlkgphARVESSKDSRVVKMSGTELVEMFLNSE-KWVDLFPtivkKA 463
                         6899*********************99999************999********************************.88888888888** PP

                         EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +t+ev++sg      galqlm+ae+  lsplvp R+f f+Ry++q +ag+w+i+dvSvds ++++++ s  R  +lpSg+li++  +g ++
  Phvul.007G101200.1 464 QTIEVLESGslgnrnGALQLMNAEMHILSPLVPtREFHFLRYCKQIEAGVWTIADVSVDSSTHKTSTVSTTR--RLPSGLLIQEITEGLCR 552
                         ***************************************************************987666666..***************** PP

                         EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                         v wvehv++++++  h l+r l+    a ga +wv +l+r ce+
  Phvul.007G101200.1 553 VSWVEHVEVDDKIQtHDLFRDLICGNNAYGAERWVLALERMCER 596
                         ************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-14767IPR009057Homeodomain-like
SuperFamilySSF466891.42E-131375IPR009057Homeodomain-like
SMARTSM003891.8E-101878IPR001356Homeobox domain
PROSITE profilePS5007113.9122074IPR001356Homeobox domain
CDDcd000862.38E-122075No hitNo description
PfamPF000469.1E-142072IPR001356Homeobox domain
PROSITE profilePS5084840.898364599IPR002913START domain
SuperFamilySSF559611.74E-25366598No hitNo description
CDDcd088754.17E-92368595No hitNo description
SMARTSM002346.0E-34373596IPR002913START domain
PfamPF018521.4E-38374596IPR002913START domain
Gene3DG3DSA:3.30.530.208.2E-5431560IPR023393START-like domain
SuperFamilySSF559616.78E-12651844No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MSSSKLSESD RSEEGIYNCR HRHDPEIIVR LEEIFKECSH PDETRRRQIG EELGLDAKQV  60
KFWFQNKKTQ LRTKSERLDI DALRLENERI QTENRIMSET LKSVACEPCG GRSKGQEERE  120
LSLQILKVEN ILLIKECERV ISFMANNGID PQLLPAIPSS SSSSLDTLRA SLTVGTSQNP  180
LILNEDPHIP SPAQHNIPAV NQHVPTATST LSQDIPIPIL NHGHSQGIPA PALVQHVSSL  240
TATSPAILHP FPSQDDSLLI SCLEYNIPAL VTALDQNIHT LASTHNQNKN NVPAAEEQSQ  300
LQGPNPCLSV PSVTPTLDQD IPPPCQDISS IFQDHTPSLD LDLDGILKIL NSARVSQPTS  360
SENKDTEKAR MLKIANTAME ELMKLLSMNE PFWFRSIVDG RFILQRDCYQ RIFQRSNTLK  420
GPHARVESSK DSRVVKMSGT ELVEMFLNSE KWVDLFPTIV KKAQTIEVLE SGSLGNRNGA  480
LQLMNAEMHI LSPLVPTREF HFLRYCKQIE AGVWTIADVS VDSSTHKTST VSTTRRLPSG  540
LLIQEITEGL CRVSWVEHVE VDDKIQTHDL FRDLICGNNA YGAERWVLAL ERMCERIASA  600
SSETIPSCES GGVIRSAESR RNIMRLTRRM VKTFCESLCM QDNTSFPHLT RMNNGGVRVA  660
VRVNMSEPGE PKGMILSAAT SFWLPLSPQH VFDYLIDDRK RAKWDVLCYG NAGHEIQRIT  720
TGSNPGNCIS IMRPFIPKVN NIVVLQESYV DALGCVMLYA PFDMKALNYA MNGEDTSLFP  780
ILPSGFTISR DGKANVPEGE SGEVGKSGGS LVTLMFQILA SSPSRMSMVD IEVVGNLNSL  840
VTSTIENIKD ALNCLDSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G101200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143783.10.0hypothetical protein PHAVU_007G101200g
TrEMBLV7BD580.0V7BD58_PHAVU; Uncharacterized protein
STRINGXP_007143783.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1737556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.11e-124homeodomain GLABROUS 12