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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G100500.1 | ||||||||
Common Name | PHAVU_007G100500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Trihelix | ||||||||
Protein Properties | Length: 343aa MW: 38928.5 Da PI: 9.5404 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.7 | 2.6e-17 | 54 | 147 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+l Li+a++ ++er ++ + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k +++ Phvul.007G100500.1 54 WTIQETLILITAKKLDDERRLKTPhdptrpacssttsssartSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSQQQ 144 *************9444444433223444455555566666699******************************************97544 PP trihelix 75 sss 77 +++ Phvul.007G100500.1 145 QHQ 147 433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-5 | 45 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.586 | 46 | 128 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.8E-11 | 53 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSDPSTTPLP HPPLLPEAHR QPLHHHPLPL IQGATAAAPS SSSSLAREYR KGNWTIQETL 60 ILITAKKLDD ERRLKTPHDP TRPACSSTTS SSARTSGELR WKWVENYCWS HGCLRSQNQC 120 NDKWDNLLRD YKKVRDYESK SQQQQHQQSH EIKHFPSYWT LNKQQRKEQN LPSNMVYEVY 180 HAITEVLQRK QTQPQLQSQT QTQRQPQQQP PVALITVSSP PPPPPPPVSS TTPAVSERSE 240 SSGTEHSEDD ADDGSESKRR KVKNLGSSIM RSASVLARAL RSCEEKKEKR HRELIELEQR 300 RLQMEEARDE VHRQGIATLV AAVTNLSGAI QSLINSERHG QR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G100500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143775.1 | 0.0 | hypothetical protein PHAVU_007G100500g | ||||
TrEMBL | V7BD78 | 0.0 | V7BD78_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143775.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G100500.1 |
Entrez Gene | 18625436 |