PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 255aa MW: 29254.4 Da PI: 4.7941

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G100100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.7e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++lv++v+++G g W I+r+ g++R +k+c++rw++yl Phvul.007G100100.1 15 RGAWSAEEDQILVNYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYL 62 89****************************99**********97 PP
2	Myb_DNA-binding	51.2	2.8e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++ +lG++ W++Ia +++ gRt++++k++w++yl Phvul.007G100100.1 68 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 113 78999***************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.402	10	62	IPR017930	Myb domain
SMART	SM00717	2.5E-15	14	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.87E-29	14	109	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-16	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-22	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.55E-11	17	62	No hit	No description
PROSITE profile	PS51294	25.871	63	117	IPR017930	Myb domain
SMART	SM00717	1.7E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-15	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	70	117	IPR009057	Homeodomain-like
CDD	cd00167	1.23E-10	72	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKRKGGHENQ DAVNRGAWSA EEDQILVNYV HLHGEGKWGQ ISRRTGLKRG GKSCRLRWLN 60 YLKPDIKRGN ISSDEEDLII RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN TYLRKKVEEK 120 HNDNNNMELG IESPQCTDID PTKSSQPVRC NEGMIPTVAL NDSVNTKDWT ENPFESTPPD 180 HHDGCEEGFP THFDLSDLLM PQEDCHFNGY ACVELPQHFG DESCGVNDAM CETWYDNWKN 240 EDYFPLDDVD FPLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-26	13	117	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G100100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	4e-54	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143770.1	0.0	hypothetical protein PHAVU_007G100100g
Swissprot	Q9S9K9	3e-51	MYB3_ARATH; Transcription factor MYB3
TrEMBL	V7BD74	0.0	V7BD74_PHAVU; Uncharacterized protein
STRING	XP_007143770.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15511	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	3e-54	myb domain protein 82

Link Out ? help Back to Top
Phytozome	Phvul.007G100100.1
Entrez Gene	18625432

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]