PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G095300.1
Common NamePHAVU_007G095300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 355aa    MW: 37742.6 Da    PI: 6.4957
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G095300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17260293134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Phvul.007G095300.1 260 CMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 293
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-733347IPR016679Transcription factor, GATA, plant
SMARTSM004013.1E-15254304IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24254290IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-14258317No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14258291IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.51E-13259316No hitNo description
PfamPF003205.8E-15260293IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVGPNFMDEI DCGSFFDHID DLLDFPVEDV DGGAPTLPSV AAAAAGNCNS LASIWPAGSD  60
SFPGSDSVFS GNSASDLSAE LSVPYEDIVQ LEWLSNFVED SFCGGSLTMK KVDEPSCTTT  120
KEDSVHNQFH TSSPVSVLES SSSCSGGKTV PAPPRSPEVY IPVPCGRARS KRPRPATFNP  180
RPAMNLISPA SSFVGENMQA NVISSKASSD SENFAESQLV AKMPKQGCGE MKKKKKVKVT  240
LGAGPGDSNN QNGLQPVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRFK SGRLYPEYRP  300
AASPTFCPSV HSNSHKKVLE MRCRGIDKSG FAMNAAASPE LIPNTNSSLT LEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G095300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143712.10.0hypothetical protein PHAVU_007G095300g
TrEMBLV7BGX10.0V7BGX1_PHAVU; GATA transcription factor
STRINGXP_007143712.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-43GATA transcription factor 9