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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.007G095000.1 |
Common Name | PHAVU_007G095000g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
ARF |
Protein Properties |
Length: 609aa MW: 66716.4 Da PI: 7.1821 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.007G095000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74 | 1.8e-23 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF
Phvul.007G095000.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL- 206
89****************************986445444..8************************************************. PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+ +++ l+v+++r+
Phvul.007G095000.1 207 -RAENGDLCVGIRRA 220
.4488999****997 PP
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2 | Auxin_resp | 113.8 | 1.6e-37 | 277 | 358 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
+ a ++s+FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
Phvul.007G095000.1 277 SCAVNGSPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 358
567899**************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 609 aa
Download sequence Send
to blast |
MFKVMENMER SSERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GKVDFGQTRV 60 PPLVPCRLSG MKYMADPDTD EVYVKMRLIP LREHELDLED DCFLGNTGVE GQEKPPTSFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAEPPVQTII AKDMHGQCWK FRHIYRGTPR 180 RHLLTTGWSN FVNQKRLVAG DSIVFLRAEN GDLCVGIRRA KKGIGGGSEF SSGWNPLFGG 240 GSGFLCGSES SLVGGAKGGG DEMVGRVAAE SVVEAISCAV NGSPFEVVYY PRASSPEFCV 300 KASVVKAAMQ IQWCSGMRFK MPFETEDSSR ISWFMGTISS VQVADPIRWP DSPWRLLQVV 360 WDEPDLLHNV KCVNPWLVEL VSNMPTFNLS AYSPPRKKQR FVHDPYFQVI NQLPMPSFSS 420 NLLNYTNSLC NIENSSSAGI QGARHAQFGL SPSDFPFNKL PAEMLLGGFS RLDHATKPIR 480 PPCGTYKNNT SNTTTKTNVD ISCLLTVGNP NQNFKESNAT KAPHILLFGK LIHTEQKSSN 540 TSSASTTGNS VSEGNSLKTS NASDGLGSAL HQNSPIETNN SDGGSPWYKE QHMADLGTDN 600 VNTLCIAL*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |