PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G090500.2
Common NamePHAVU_007G090500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 513aa    MW: 56945 Da    PI: 6.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G090500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.5e-07261282223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Phvul.007G090500.2 261 FCTICGKGFKRDANLRMHMRGH 282
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-5258285No hitNo description
SMARTSM003550.0026260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03260287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-6261311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035564309342IPR015880Zinc finger, C2H2-like
SMARTSM0035527347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDLEGGLCAN NCTRSSSLTS PGNGLQTNLS SDPPSFYGLE IESPFNTFNP PSPPIQSVLP  60
GQSNTDIEIP DQENCPLSDS SNTTKLQDWN PSAMLNNLCF LEEKIHQLRD LVHLIVNKKC  120
QPFGQSHELV TQEQQLVTAD LTSIIVQLIS TAGNLLPSVR HTLTNTNPLV GQMDQLHGIN  180
LPFGSEPSSG IRPQNSSGNK LFGKSTPNDR PNPCEMEQNY NMEEHEPKDE EDVDEGESLP  240
PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDEYKTPA ALAKPHKETG  300
SEPKLIKRYS CPYAGCKRNK DHKKFLPLKT ILCVKNHYKR THCDKSYTCS RCNMKKFSVM  360
ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLDDIKR VAEPPDPQNR  420
ECSNKVGSVN FCFGSKLSSE NGVQNMMDMK GNIDDPMNYF SSLNFEGCNF GAFNEFPQTP  480
FEDSEGSFSF LMSGSFNYAP KFGGGESSTD NL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G090500.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6371720.0KP637172.1 Vigna umbellata sensitive to proton rhizotoxicity1 (STOP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143658.10.0hypothetical protein PHAVU_007G090500g
RefseqXP_007143659.10.0hypothetical protein PHAVU_007G090500g
SwissprotQ9C8N51e-174STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLV7BFN50.0V7BFN5_PHAVU; Uncharacterized protein
STRINGXP_007143658.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-176C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]