 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Phvul.007G079700.1 |
Common Name | PHAVU_007G079700g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
Family |
Trihelix |
Protein Properties |
Length: 719aa MW: 79820.6 Da PI: 6.6895 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.007G079700.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 95.1 | 6.5e-30 | 136 | 219 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg++++ ++ +t+++fd+l+
Phvul.007G079700.1 136 RWPRQETLALLRIRKDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGK--QDGKTYRFFDELQ 219
8********************************************************************95..67778******98 PP
|
2 | trihelix | 102.5 | 3.3e-32 | 534 | 619 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r++++++++++ k+plWee+s+ mr+ g+ r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
Phvul.007G079700.1 534 RWPKVEVQALIKLRTNLDSKYQENGPKGPLWEEISSSMRKLGYIRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 619
8********************************************************************97.99***********85 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 719 aa
Download sequence Send
to blast |
MMQNITAIET LTPFITLIIP RVYYRYNKIN KQISSPRKER ERERGGIAVC CCNCCGAVLE 60 KRERDPKETM LGDSAVLGAG GGSGGGEGGA SVDAVGGVTH EGAVVASGGG GGVGSNSGDD 120 ERGRIDEGER SFGGNRWPRQ ETLALLRIRK DMDVAFRDAS VKGPLWEEVS RKMAELGYHR 180 SSKKCKEKFE NVYKYHKRTK EGRSGKQDGK TYRFFDELQA LENHTPTPHS PNPSPKPPQS 240 APSRVIATTA ASVSLPIATA TASSLSLPIP TTITTVPMQP ILSNTTLTST VPHITVPSTT 300 TLPITIPQPI LTTPSIHLSI PSNPPTNPTI NTTPPPSFPT LPTDTFSNSS SSSTSSDETL 360 EGRRKRKRKW KDFFERLMKE VIEKQEDLQK KFLEAIEKRE HDRIAREEAW RVQEMQRINR 420 EREILAQERS IAAAKDAAVM SFLQKIAEQQ NLGQALSNIN LVQQPPHQQP QPPLQQLPPS 480 SVAPPPAQQP LPAVVTQPVV LPVFSQVTNM EIVKVDNNNN NNSCENFTPS SSSRWPKVEV 540 QALIKLRTNL DSKYQENGPK GPLWEEISSS MRKLGYIRNA KRCKEKWENI NKYFKKVKES 600 NKRRPEDSKT CPYFHQLDAL YRERSKVEGV AAAVKPESTV APLMVRPEQQ WPPQEESMRD 660 RDIRMEDVEN EEDEYEEERD GEGEEEEDDE EDEEGGGGGK YEIVANKTSG GSVGASTE*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 362 | 367 | RRKRKR |
2 | 362 | 368 | RRKRKRK |
3 | 363 | 368 | RKRKRK |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |