PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G067800.1
Common NamePHAVU_007G067800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 305aa    MW: 34047.3 Da    PI: 7.5031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G067800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36241142101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+++g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+
  Phvul.007G067800.1  24 FLTKTYQLVDDPAIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGQKR 105
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Phvul.007G067800.1 106 LLCEIQRRK 114
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3813108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.2E-212447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-216274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-217587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAPPLEHNSD STSAESQRSI PTPFLTKTYQ LVDDPAIDDV ISWNDSGSSF IVWNTTVFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNECFR RGQKRLLCEI QRRKILSSSP  120
PAGATGSVAV PSLPTPSAIP IAKSIVSPSN STEEQVISSN SSPSRAPAEL LDENERLKKE  180
NILLTKELEE MRSLCNNIFN LMSNYATARA DGGAEAGKML GLMPSKRCSG EGAVKEMNPK  240
LFGVAIGTKR SREEGRGAEY DTVLSLHQFH EDMKSEPLDF ERHGENRITS WLNHYRTANE  300
RVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-272411329129Heat shock factor protein 1
5d5v_B2e-272411329129Heat shock factor protein 1
5d5v_D2e-272411329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G067800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143381.10.0hypothetical protein PHAVU_007G067800g
SwissprotQ9SCW42e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLV7BCR90.0V7BCR9_PHAVU; Uncharacterized protein
STRINGXP_007143381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-89heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]