PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G061800.1
Common NamePHAVU_007G061800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 354aa    MW: 40995.3 Da    PI: 5.0941
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G061800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35451372103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d++++++isws+ +nsf+v+d++ f+ ++Lpk+Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +gk+ 
  Phvul.007G061800.1  45 FLTKTYDIVDDPSTNHIISWSSGNNSFIVWDPQAFSITLLPKFFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEMFLRGKRI 126
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Phvul.007G061800.1 127 LLKNIRRRKTN 137
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3441134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3741134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-5841134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNPQGRVKEE FLGESSSFYG GYDPHPVMIV PQPIEGLHQT GLPPFLTKTY DIVDDPSTNH  60
IISWSSGNNS FIVWDPQAFS ITLLPKFFKH NNFSSFVRQL NTYGFKKVDP DKWEFANEMF  120
LRGKRILLKN IRRRKTNHQS HAMQQGVDPC VEVGQFGLDR EVDRLKRDRQ VLMGELVKLR  180
QQQQNTRVHI QAIEGRLKKT EQNQQQTMNF LARVMQNPNF VQQLVQQKEL RKELEEGFSK  240
KRRSLDQGPS NVVEVGELDC AEEYSSFIEL EPQVYNEKVL EFEVPDLDLG LNLEEQIGRQ  300
KRMEGDYIQL ESIDKDIDEV FWQDLLKEDI EDQGVLGVDV LAQQLGYLAS SYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-254013715123Heat shock factor protein 1
5d5u_B8e-254013624131Heat shock factor protein 1
5d5v_B8e-254013624131Heat shock factor protein 1
5d5v_D8e-254013624131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G061800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143314.10.0hypothetical protein PHAVU_007G061800g
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLV7BEI80.0V7BEI8_PHAVU; Uncharacterized protein
STRINGXP_007143314.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B