PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G045000.1
Common NamePHAVU_007G045000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 353aa    MW: 38486.5 Da    PI: 4.8179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G045000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-112763161055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Phvul.007G045000.1 276 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 316
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.402266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14266331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13271325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00176282320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDPTDQISEE WSSLSGFCTA EEADFMSQLL GNCSLPENLS GNFHLGIPSA TWPGHESTIV  60
TVTSINESPY YPTTADNSNS SYLCFSQGSS STSDSSNIFP TTSGNKHCLN DPVANIGYMS  120
MGFAKFSPYN VQGSHNQQMN ENTDQDLGLE VIADKNSLDH QECEVLVSEA AKEDITTNLE  180
KSGKRSRGSM QVRKSKKNAK SVKKPKSDSI SNSEEGRSPD LHGCCSEDDD SNASQELNGG  240
GSSSLSLEDS TYLKLKGKKS TASRGSATDP QSVYARRRRE RINERLKILQ NLVPNGTKVD  300
ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY APIAYNGMNI GLDLNITPTK QP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G045000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143115.10.0hypothetical protein PHAVU_007G045000g
TrEMBLV7BBA10.0V7BBA1_PHAVU; Uncharacterized protein
STRINGXP_007143115.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-46bHLH family protein